研究目的
To understand how DNA gyrase acts in live Escherichia coli cells and how topological problems arising during replication and transcription are resolved.
研究成果
A small number of gyrase acting processively ensures unimpeded progression of the replisome, while a majority of gyrase is involved in maintaining steady-state levels of chromosome supercoiling.
研究不足
The super-resolution techniques used cannot rival the atomic-level precision of structural biology studies, placing limitations on the extent of what can be known about the activity of any individual gyrase enzyme.
1:Experimental Design and Method Selection:
High-speed single-molecule fluorescence imaging was used to observe DNA gyrase activity in live Escherichia coli cells.
2:Sample Selection and Data Sources:
Derivatives of E. coli K-12 AB1157 were used, with endogenous genes replaced with C-terminal fluorescent fusions.
3:List of Experimental Equipment and Materials:
Epifluorescence and colocalization microscopy, Photoactivated Localization microscopy (PALM), Slimfield microscopy.
4:Experimental Procedures and Operational Workflow:
Cells were immobilized for imaging on agarose pads between glass coverslips. Gyrase activity was observed under various conditions, including treatment with ciprofloxacin and rifampicin.
5:Data Analysis Methods:
Data analysis was performed in MATLAB, with fluorescent signals from individual molecules localized by elliptical Gaussian fitting.
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