研究目的
Characterization of a novel opsin family from green algae, specifically light-inhibited guanylyl cyclases regulated through a two-component-like phosphoryl transfer, to understand green algae photobiology and develop new tools for optogenetics.
研究成果
Cr2c-Cyclop1 and Vc2c-Cyclop1 are identified as light-inhibited, ATP-dependent guanylyl cyclases with an eight-transmembrane helix structure, classified as type Ib opsins. They function through a phosphoryl transfer mechanism inhibited by light. Overexpression in V. carteri confirmed in vivo activity, and localization studies revealed specific subcellular structures. These findings advance understanding of algal photobiology and offer potential optogenetic tools for cGMP regulation.
研究不足
The study is limited to specific green algae species (C. reinhardtii and V. carteri), and the functional role of 2c-Cyclop in its native context is not fully understood due to the presence of multiple photoreceptors and guanylyl cyclases. Expression levels and light inhibition in vivo were less marked compared to in vitro assays. The photocycle turnover time was estimated but not precisely measured.
1:Experimental Design and Method Selection:
The study involved cloning and heterologous expression of 2c-Cyclop proteins in Xenopus oocytes, in vitro assays for guanylyl cyclase activity, mutation analysis, and homologous expression in V. carteri for in vivo validation. Bioinformatics tools were used for sequence alignment and prediction.
2:Sample Selection and Data Sources:
Total RNA from wild-type algae of C. reinhardtii and V. carteri was used for RT-PCR to obtain cDNA sequences. Genomic data from Phytozome databases were referenced.
3:List of Experimental Equipment and Materials:
Xenopus oocytes, ND96 buffer, all-trans-retinal (ATR), guanylyl cyclase reaction buffer, DetectX High Sensitivity Direct Cyclic GMP Chemiluminescent Immunoassay Kit, confocal microscopes (Leica DM6000, LSM780), particle gun for transformation, gold microprojectiles, TRI Reagent for RNA extraction, real-time PCR systems.
4:Experimental Procedures and Operational Workflow:
Membrane extraction from oocytes, in vitro reactions with light/dark conditions, fluorescence emission measurements, action spectrum determination, mutation introduction via PCR, transformation of V. carteri with DNA-coated microprojectiles, RNA extraction, quantitative RT-PCR, cGMP measurement in cell lysates, live cell imaging with YFP-tagged proteins.
5:Data Analysis Methods:
Data analyzed with OriginPro and Microsoft Excel, using standard deviation for error bars. Sequence alignment with Clustal Omega and Genedoc, transmembrane prediction with TMHMM.
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Confocal Microscope
DM6000
Leica
Imaging of Xenopus oocytes and fluorescence detection
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Confocal Laser Scanning Microscope
LSM780
Carl Zeiss
Live cell imaging of YFP-tagged proteins in V. carteri
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AmpliCap-MaxT7 High Yield Message Maker Kit
Epicentre Biotechnologies
In vitro transcription of cRNA for Xenopus oocyte injection
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DetectX High Sensitivity Direct Cyclic GMP Chemiluminescent Immunoassay Kit
Arbor assays
Measurement of cGMP concentration in samples
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Protease Inhibitor Cocktail
Roche
Inhibition of proteases during membrane extraction
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Particle Gun
Transformation of V. carteri using DNA-coated microprojectiles
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Gold Microprojectiles
1.0 μm diameter
Bio-Rad
Coating with DNA for particle bombardment transformation
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TRI Reagent
Sigma-Aldrich
Extraction of total RNA from algae samples
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Real-Time PCR Detection System
CFX96 Touch
Bio-Rad
Quantitative real-time RT-PCR for mRNA expression analysis
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SensiFAST SYBR Hi-Rox One-Step Kit
Bioline
One-step RT-PCR for quantitative gene expression analysis
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Bead Mill Homogenizer
Precellys Evolution
Cell disruption and lysis for sample preparation
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