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Thin-core fiber-optic biosensor for DNA hybridization detection
摘要： A real-time label-free DNA biosensor based on thin-core fiber (TCF) interferometer is demonstrated experimentally. The proposed biosensor is constructed by splicing a TCF between two segments of single mode fibers (SMFs) and integrated into a microfluidic channel. By modifying the TCF surface with monolayer poly-l-lysine (PLL) and single-stranded deoxyribonucleic acid (ssDNA) probes, the target DNA molecules can be captured in the microfluidic channel. The transmission spectra of the biosensor are measured and theoretically analyzed under different biosensing reaction processes. The results show that the wavelength has a blue-shift with the process of the DNA hybridization. Due to the advantages of low cost, simple operation as well as good detection effect on DNA molecules hybridization, the proposed biosensor has great application prospects in the fields of gene sequencing, medical diagnosis, cancer detection and environmental engineering.
关键词： thin-core fiber,biosensor,microfluidic channel,modal interference,DNA hybridization
更新于2025-11-28 14:23:57
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Graphene-Based Steganographicly Aptasensing System for Information Computing, Encryption and Hiding, Fluorescent Sensing and In Vivo Imaging of Fish Pathogens
摘要： Inspired by information processing and communication of life based on complex molecular interactions, some artificial (bio)chemical systems have been developed for applications in molecular information processing or chemo/biosensing and imaging. However, little attention has been paid to simultaneously and comprehensively utilize the information computing, encoding and molecular recognition capabilities of molecular-level systems (such as DNA-based systems) for multifunctional applications. Herein, a graphene-based steganographicly aptasensing system was constructed for multifunctional application, which relies on specific molecular recognition and information encoding abilities of DNA aptamers (Aeromonas hydrophila and Edwardsiella tarda-binding aptamers as models) and the selective adsorption and fluorescence quenching capacities of graphene oxide (GO). Although graphene-DNA systems have been widely used in biosensors and diagnostics, our proposed graphene-based aptasensing system can not only be utilized for fluorescent sensing and in vivo imaging of fish pathogens (Aeromonas hydrophila and Edwardsiella tarda), but can also function as a molecular-level logic computing system where the combination of matters (specific molecules or materials) as inputs produces the resulting product (matter level) or fluorescence (energy level) changes as two outputs. More importantly and interestingly, our graphene-based steganographicly aptasensing system can also be served as a generally doubly cryptographic and steganographic system for sending different secret messages by using pathogen-binding DNA aptamers as information carriers, GO as a cover, a pair of keys: target pathogen as a public key, the encryption key used to encode or decode a message in DNA as a private key. Our study not only provides a novel nano-biosensing assay for rapid and effective sensing and in vivo imaging fish pathogens, but also demonstrates a prototype of (bio)molecular steganography as an important and interesting extension direction of molecular information technology, which is helpful in probably promoting the development of multifunctional molecular-level devices or machines.
关键词： aptasensing,steganography,graphene oxide,DNA aptamer,encryption,fish pathogens,in vivo imaging,information hiding
更新于2025-11-21 11:24:58
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Femtosecond Spectroscopy of Au Hot-Electron Injection into TiO2: Evidence for Au/TiO2 Plasmon Photocatalysis by Bactericidal Au Ions and Related Phenomena
摘要： In the present work, we provide evidence for visible light irradiation of the Au/TiO2 nanoparticles’ surface plasmon resonance band (SPR) leading to electron injection from the Au nanoparticles to the conduction band of TiO2. The Au/TiO2 SPR band is shown to greatly enhance the light absorption of TiO2 in the visible region. Evidence is presented for the light absorption by the Au/TiO2 plasmon bands leading to the dissolution of Au nanoparticles. This dissolution occurs concomitantly with the injection of the hot electrons generated by the Au plasmon into the conduction band of TiO2. The electron injection from the Au nanoparticles into TiO2 was followed by femtosecond spectroscopy. The formation of Au ions was further confirmed by the spectral shift of the transient absorption spectra of Au/TiO2. The spectral changes of the SPR band of Au/TiO2 nanoparticles induced by visible light were detected by spectrophotometer, and the morphological transformation of Au/TiO2 was revealed by electron microscopy techniques as well. Subsequently, the fate of the Au ions was sorted out during the growth and biofilm formation for some selected Gram-negative bacteria. This study compares the bactericidal mechanism of Au ions and Ag ions, which were found to be substantially different depending on the selected cell used as a probe.
关键词： electron injection,antibacterial effects,genes expression,DNA repair,quorum sensing,plasmon photocatalysis,biofilms,gold nanoparticles,porins
更新于2025-11-21 11:20:42
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TRACKING DOWN ALPHA-PARTICLES: THE DESIGN, CHARACTERISATION AND TESTING OF A SHALLOW-ANGLED ALPHA-PARTICLE IRRADIATOR
摘要： Human exposure to α-particles from radon and other radionuclides is associated with carcinogenesis, but if well controlled and targeted to cancer cells, α-particles may be used in radiotherapy. Thus, it is important to understand the biological effects of α-particles to predict cancer risk and optimise radiotherapy. To enable studies of α-particles in cells, we developed and characterised an α-particle automated irradiation rig that allows exposures at a shallow angle (70° to the normal) of cell monolayers in a 30 mm diameter dish to complement standard perpendicular irradiations. The measured incident energy of the α-particles was 3.3 ± 0.5 MeV (LET in water = 120 keV μm?1), with a maximum incident dose rate of 1.28 ± 0.02 Gy min?1, which for a 5 μm cell monolayer corresponds to a mean dose rate of 1.57 ± 0.02 Gy min?1 and a mean LET in water of 154 keV μm?1. The feasibility of resolving radiation-induced DNA double-strand breaks (DSB) foci along the track of α-particles was demonstrated using immuno?uorescent labelling with γH2AX and 53BP1 in normal MRC-5 human lung cells.
关键词： DNA double-strand breaks,irradiation rig,shallow angle,α-particles,immuno?uorescent labelling
更新于2025-11-21 11:08:12
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Multicharged Phthalocyanines as Selective Ligands for G-Quadruplex DNA Structures
摘要： The stabilization of G-Quadruplex DNA structures by ligands is a promising strategy for telomerase inhibition in cancer therapy since this enzyme is responsible for the unlimited proliferation of cancer cells. To assess the potential of a compound as a telomerase inhibitor, selectivity for quadruplex over duplex DNA is a fundamental attribute, as the drug must be able to recognize quadruplex DNA in the presence of a large amount of duplex DNA, in the cellular nucleus. By using different spectroscopic techniques, such as ultraviolet-visible, fluorescence and circular dichroism, this work evaluates the potential of a series of multicharged phthalocyanines, bearing four or eight positive charges, as G-Quadruplex stabilizing ligands. This work led us to conclude that the existence of a balance between the number and position of the positive charges in the phthalocyanine structure is a fundamental attribute for its selectivity for G-Quadruplex structures over duplex DNA structures. Two of the studied phthalocyanines, one with four peripheral positive charges (ZnPc1) and the other with less exposed eight positive charges (ZnPc4) showed high selectivity and affinity for G-Quadruplex over duplex DNA structures and were able to accumulate in the nucleus of UM-UC-3 bladder cancer cells.
关键词： telomerase inhibition,selectivity,salmon sperm DNA,UV-Vis,circular dichroism,hyperchromism,G-Quadruplexes,G4-FID,multicharged phthalocyanines
更新于2025-11-21 11:08:12
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A Label-Free Fluorescent DNA Calculator Based on Gold Nanoparticles for Sensitive Detection of ATP
摘要： Herein we described a deoxyribonucleic acid (DNA) calculator for sensitive detection of the determination of adenosine triphosphate (ATP) using gold nanoparticles (GNP) and PicoGreen fluorescence dye as signal transducer, and ATP and single-stranded DNA (DNA-M') as activators. The calculator-related performances including linearity, reaction time, logic gate, and selectivity were investigated, respectively. The results revealed that this oligonucleotide sensor was highly sensitive and selective. The detection range was 50–500 nmol/L (R2 = 0.99391) and the detection limit was 46.5 nmol/L. The AND DNA calculator was successfully used for the ATP detection in human urine. Compared with other methods, this DNA calculator has the characteristics of being label-free, non-enzymic, simple, and highly sensitive.
关键词： DNA calculator,enzyme-free,gold nanoparticles,label-free fluorescence,ATP detection
更新于2025-11-19 16:46:39
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A Label-Free Fluorescent DNA Machine for Sensitive Cyclic Amplification Detection of ATP
摘要： In this study, a target recycled ampli?cation, background signal suppression, label-free ?uorescent, enzyme-free deoxyribonucleic acid (DNA) machine was developed for the detection of adenosine triphosphate (ATP) in human urine. ATP and DNA fuel strands (FS) were found to trigger the operation of the DNA machine and lead to the cyclic multiplexing of ATP and the release of single stranded (SS) DNA. Double-stranded DNA (dsDNA) was formed on graphene oxide (GO) from the combination of SS DNA and complementary strands (CS(cid:48)). These double strands then detached from the surface of the GO and in the process interacted with PicoGreen dye resulting in amplifying ?uorescence intensity. The results revealed that the detection range of the DNA machine is from 100 to 600 nM (R2 = 0.99108) with a limit of detection (LOD) of 127.9 pM. A DNA machine circuit and AND-NOT-AND-OR logic gates were successfully constructed, and the strategy was used to detect ATP in human urine. With the advantage of target recycling ampli?cation and GO suppressing background signal without ?uorescent label and enzyme, this developed strategy has great potential for sensitive detection of different proteins and small molecules.
关键词： cyclic ampli?cation,ATP detection,DNA machine,label-free ?uorescence,graphene oxide,logic gate
更新于2025-11-19 16:46:39
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Ultrathin Ti3C2 Nanosheets based “off-on” Fluorescent nanoprobe for Rapid and Sensitive Detection of HPV Infection
摘要： MXenes as a new class of 2D materials have recently been widely applied in energy storage, electrocatalysis, sensors, adsorption, water purification, and so on, due to their tunable versatile properties. Herein, we demonstrate a simple, rapid and highly-sensitive sensing platform based on ultrathin two-dimensional MXene Ti3C2 nanosheets (Ti3C2 NSs) for selective analysis of Human papillomavirus (HPV), a major human pathogens and causative agents of cervical cancer. Ultrathin Ti3C2 NSs, obtained by exfoliating their layered HF-etched powder, exhibit high fluorescence quenching ability to dye-labeled single-stranded DNA (ssDNA) and different affinities for ssDNA and double-stranded DNA (dsDNA). Under the fluorescence quenching effect of Ti3C2 NSs, ssDNA probe (P) shows the minimal fluorescent emission. After the formation of duplex structure with its complementary target, ssDNA (T), the fluorescence intensity enhances evidently. Exonuclease III (Exo III) was used to improve the sensitivity by promoting more fluorescence enhancement. This magnified fluorescent sensor for HPV-18 detection shows a low detection limit of 100 pM and a high specificity. Furthermore, the developed DNA sensor can be employed to determine PCR amplified HPV-18 from cervical scrapes samples. It highlights ultrathin Ti3C2 NSs as a potential candidate for construction of fluorescence DNA biosensors with excellent performances.
关键词： DNA hybridization,Ti3C2 nanosheets,HPV,Fluorescent detection
更新于2025-11-19 16:46:39
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Electrochemiluminescence sensing platform for ultrasensitive DNA analysis based on resonance energy transfer between graphitic carbon nitride quantum dots and gold nanoparticles
摘要： Electrogenerated chemiluminescence (ECL) of semiconductor quantum dots (QDs) is considered as a powerful technique in the fabrication of biosensor, however, the inherent toxicity of the heavy metal ion containing in QDs limits their further applications. Thus, searching for environment-friendly luminescent nanomaterials with high electrochemiluminescence (ECL) e?ciency is an urgent goal. In this work, a solid-state method under low temperature was adopted to prepare graphitic carbon nitride quantum dots (g-CNQDs). By using coreactant K2S2O8, a strong cathodic ECL signal of g-CNQDs could be observed in phosphate bu?er. A novel ECL resonance energy transfer procedure was constructed between g-CNQDs (emitter) and gold nanoparticles (acceptor). A signal probe was formed by connecting gold nanoparticles at the hairpin DNA (Hai-DNA) terminal. When the signal probe was anchored on g-CNQDs, ECL resonance energy transfer occurred due to the ECL quenching of gold nanoparticles to g-CNQDs. This phenomenon decreased the ECL signal. In the presence of target DNA (T-DNA), the looped structure of Hai-DNA could be destroyed by T-DNA, and gold nanoparticles were separated from g-CNQDs. Accordingly, the ECL resonance energy transfer procedure was hindered, and the ECL signal was recovered again. The ECL intensities exhibited linear correlation with the logarithm of T-DNA concentration from 0.02 fM to 0.1 pM, and the limit of detection was 0.01 fM (3σ). With the developed ECL resonance energy transfer system, good selectivity and high sensitivity were achieved in T-DNA detection.
关键词： Graphitic carbon nitride quantum dots,Electrochemiluminescence,DNA,Resonance energy transfer,Biosensor
更新于2025-11-14 17:04:02
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Systematic Truncating Aptamers to Create High Performance Graphene Oxide (GO)-based Aptasensors for Multiplex Detection of Mycotoxins
摘要： Graphene Oxide (GO)-based aptasensor is currently one of the most popular sensing platforms for simple and rapid detection of various targets. Unfortunately, the GO-based aptasensors with long aptamer strands typically show unsatisfactory performance resulted from insignificant structural transformations upon target bindings. We report herein the utilization of an aptamer truncating strategy to combat such a challenge. Taking a pre-selected anti-aflatoxin B1 (AFB1) aptamer (P-AFB1-50) as a trial system, we sequentially remove the extraneous nucleotides within the aptamer by means of circular dichroism (CD) spectroscopy and binding affinity analysis. Particularly, the ratio of the quenching constants between the GO sheets and the truncated aptamers (labelled with fluorophores) in the absence and presence of target was determined for each of the truncated aptamers to evaluate the optimal sequence. As a result, the truncated aptamer comprising 40 nucleotides was confirmed to show the highest FL output and best detection limit upon conjugation with GO sheets. More importantly, we demonstrated that this truncating strategy is versatile, i.e., it can be easily extended to other aptamer systems (anti-ochratoxin A (OTA) aptamer, P-OTA-61, as an example) for extraneous nucleotide identification. Impressively, the two optimal truncated aptamers can work together on GO sheets to achieve a simultaneous detection of two different mycotoxins (i.e., AFB1 and OTA) in one single testing. Essentially, this research opens a new avenue for the design and testing of aptamer/GO based-sensing platforms for rapid, low-cost and multiplex quantification of analytical targets of interest.
关键词： DNA/GO-based biosensors,AFB1,OTA,long-chain aptamer,multiplex detection,extraneous nucleotide truncation
更新于2025-11-14 15:28:36