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Aptamer-Based Fluorometric Ochratoxin A Assay Based on Photoinduced Electron Transfer
摘要： This study describes a novel quencher-free fluorescent method for ochratoxin A (OTA) detection based on the photoinduced electron transfer (PIET) between guanine and fluorophore. In the absence of OTA, carboxyfluorescein (FAM)-labeled aptamer can partly hybridize with the complementary strand of OTA aptamer (OTA-cAPT), which contains four guanines at its 3'-end. As a result, the fluorescence of FAM is quenched due to PIET and stacked guanines. In the presence of OTA, FAM-labeled OTA aptamer can bind specifically to OTA, and thereby the high fluorescence intensity of the dye can be maintained. Under the optimal conditions, the method had a detection limit of 1.3 nM. In addition, the method we proposed is highly sensitive and specific for OTA. Furthermore, the method was proven to be reliable based on its successful application in the detection of OTA in red wine samples. Therefore, this promising, facile, and quencher-free method may be applied to detect other toxins by using other appropriate aptamers.
关键词： fluorescence,ochratoxin A,photoinduced electron transfer,quencher-free
更新于2025-09-19 17:15:36
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F?rster Resonance Energy Transfer between Colloidal CuInS2/ZnS Quantum Dots and Dark Quenchers
摘要： F?rster resonance energy transfer (FRET) using colloidal semiconductor quantum dots (QDs) and dyes is of importance in a wide range of biological and biophysical studies. Here, we report a study on FRET between CuInS2/ZnS QDs and dark quencher dye molecules (IRDye QC-1). Oleate-capped QDs with photoluminescence quantum yields (PLQYs) of 55±4% are transferred into water by using two types of multifunctional polymer ligands combining imidazole groups and specific moieties with amine or methoxy groups as the terminal sites. The resulting water-dispersible QDs show PLQYs as high as 44±4% and exhibit long-term colloidal stability (at least 10 months at 4 °C in the dark) with a hydrodynamic diameter of less than 20 nm. A side-by-side comparison experiment was performed using the amine or methoxy-functionalized QDs for coupling to dark quencher dye molecules. The amine-functionalized QDs bind to the dye molecules via covalent bonds while methoxy-functionalized ones bind only weakly and non-specifically. The progressive quenching of the QD emission and shortening of its photoluminescence decay time upon increasing the number of conjugated dye molecules demonstrate that the QD acts as the energy donor and the dark quencher dye as the energy acceptor in a donor-acceptor FRET pair. The FRET dynamics of the QD-dye conjugates are simulated using two different models based on the possible origin of the multiexponential PL decay of the QDs (i.e., variations in nonradiative or radiative decay rates). The model based on the radiative decay rates provides a better fit of our experimental data and estimates a donor–acceptor distance (6.5 nm) that matches well the hydrodynamic radius of the amine-functionalized QDs.
关键词： dark quencher dye molecules,energy acceptor,multifunctional polymer ligands,CuInS2/ZnS,F?rster resonance energy transfer,colloidal semiconductor quantum dots,energy donor,photoluminescence quantum yields
更新于2025-09-12 10:27:22
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A fluorescence quenching based gene assay for Escherichia coli O157:H7 using graphene quantum dots and gold nanoparticles
摘要： A fluorometric assay is described for highly sensitive quantification of Escherichia coli O157:H7. Reporter oligos were immobilized on graphene quantum dots (GQDs), and quencher oligos were immobilized on gold nanoparticles (AuNPs). Target DNA was co-hybridized with reporter oligos on the GQDs and quencher oligos on AuNPs. This triggers quenching of fluorescence (with excitation/emission peaks at 400 nm/530 nm). On introducing target into the system, fluorescence is quenched by up to 95% by 100 nM concentrations of target oligos having 20 bp. The response to the fliC gene of E. coli O157:H7 increases with the logarithm of the concentration in the range from 0.1 nM to 150 nM. The limit of detection is 1.1 ± 0.6 nM for n = 3. The selectivity and specificity of the assay was confirmed by evaluating the various oligos sequences and PCR product (fliC gene) amplified from genomic DNA of the food samples spiked with E. coli O157:H7.
关键词： Food pathogens,Static quenching,fliC gene,Selectivity,Fluorophore,Quencher,Real samples
更新于2025-09-11 14:15:04
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Tethered Bichromophoric Fluorophore Quencher Voltage Sensitive Dyes
摘要： Voltage sensitive dyes (VSDs) are used for in vitro drug screening and for imaging of patterns of electrical activity in tissue. Wide application of this technology depends on the availability of sensors with high sensitivity (percent change of fluorescence per 100mV), high fluorescence quantum yield, and fast response kinetics. A promising approach uses a 2-component system consisting of anionic membrane permeable quenchers with fluorophores labeling one side of the membrane; this produces voltage-dependent fluorescence quenching. However, the quencher must be kept at low concentrations to minimize pharmacological effects, thus limiting sensitivity. By developing tethered bichromophoric fluorophore quencher (TBFQ) dyes, where the fluorophore and quencher are covalently connected by a long hydrophobic chain, the sensitivity is maximized and is independent of VSD concentration. A series of 13 TBFQ dyes based on the AminoNaphthylEthenylPyridinium (ANEP) fluorophore and the dipicrylamine anion (DPA) quencher have been synthesized and tested in an artificial lipid bilayer apparatus. The best of these, TBFQ1, shows a 2.5 fold change in fluorescence per 100mV change in membrane potential, and the response kinetics is in 10-20 ms range. This sensitivity is an order of magnitude better than commonly used VSDs. However the fluorescence quantum yield is only 1.6%, which may make this first generation of TBFQ VSDs impractical for in vivo electrical imaging. Nevertheless, the design principles established here can serve as foundation for improved TBFQ VSDs. We believe this approach promises to greatly enhance our ability to monitor electrical activity in cells and tissues.
关键词： voltage sensitive dye,DPA,FRET,fluorescent,quencher,potentiometric
更新于2025-09-09 09:28:46