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Fluctuating light experiments and semi-automated plant phenotyping enabled by self-built growth racks and simple upgrades to the IMAGING-PAM

DOI:10.1186/s13007-019-0546-1 期刊:Plant Methods 出版年份:2019 更新时间:2025-09-12 10:27:22
摘要: Background: Over the last years, several plant science labs have started to employ fluctuating growth light conditions to simulate natural light regimes more closely. Many plant mutants reveal quantifiable effects under fluctuating light despite being indistinguishable from wild?type plants under standard constant light. Moreover, many subtle plant phenotypes become intensified and thus can be studied in more detail. This observation has caused a paradigm shift within the photosynthesis research community and an increasing number of scientists are interested in using fluctuating light growth conditions. However, high installation costs for commercial controllable LED setups as well as costly phenotyping equipment can make it hard for small academic groups to compete in this emerging field. Results: We show a simple do?it?yourself approach to enable fluctuating light growth experiments. Our results using previously published fluctuating light sensitive mutants, stn7 and pgr5, confirm that our low?cost setup yields similar results as top?prized commercial growth regimes. Moreover, we show how we increased the throughput of our Walz IMAGING?PAM, also found in many other departments around the world. We have designed a Python and R?based open source toolkit that allows for semi?automated sample segmentation and data analysis thereby reducing the processing bottleneck of large experimental datasets. We provide detailed instructions on how to build and functionally test each setup. Conclusions: With material costs well below USD$1000, it is possible to setup a fluctuating light rack including a constant light control shelf for comparison. This allows more scientists to perform experiments closer to natural light conditions and contribute to an emerging research field. A small addition to the IMAGING?PAM hardware not only increases sample throughput but also enables larger?scale plant phenotyping with automated data analysis.
作者: Dominik Schneider,Laura S. Lopez,Hans?Henning Kunz,Joseph D. Crawford,Helmut Kirchhoff,Meng Li
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To enable fluctuating light growth experiments with a low-cost setup and increase the throughput of the Walz IMAGING?PAM for semi-automated plant phenotyping.

The low-cost fluctuating light setup and modifications to the IMAGING-PAM enable more scientists to perform experiments under natural light conditions and contribute to photosynthesis research. The automated data analysis pipeline significantly reduces the processing time of large datasets.

The low-priced LED panels' light intensity cannot be implicitly changed, requiring additional adjustments for different intensities. The setup's capacity is limited by the physical dimensions and the light swath of the LED panels.

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