研究目的
Investigating the displacement driven by a power stroke of single-headed cytoplasmic dynein and understanding its mechanochemical reactions with microtubules under physiological conditions.
研究成果
The displacement driven by a power stroke of single-headed cytoplasmic dynein was determined to be 8.3 nm. The ATP-dependent displacement was explained by a model where dynein binds to microtubules in either pre-stroke or post-stroke conformations. The study provided insights into the mechanochemical reactions of dynein and proposed a walking model for dimeric dynein based on the 8-nm power stroke.
研究不足
The study focused on single-headed dynein, which may not fully represent the behavior of dimeric dynein in vivo. The optical tweezer measurements had large standard deviations due to Brownian motion of microtubule-beads. The study did not explore the effects of other cellular components or adapters on dynein motility.
1:Experimental Design and Method Selection:
The study used optical tweezers to measure the displacements of single-headed cytoplasmic dynein interacting with microtubules under various ATP concentrations. The methodology included constructing single-headed dynein molecules, measuring FRET efficiencies, and analyzing the ATP-dependent displacement and binding times.
2:Sample Selection and Data Sources:
Single-headed dynein constructs (D384, D384GB, and mutants) were prepared and their interactions with microtubules were observed. Data were collected from FRET measurements, optical tweezer experiments, and biochemical assays.
3:List of Experimental Equipment and Materials:
Optical tweezers, spectrofluorometer (FP-6600, Jasco), electron microscope (Tecnai F20), and various biochemical reagents including ATP, ADP-Vi, and microtubules.
4:Experimental Procedures and Operational Workflow:
Dynein-coated beads were fixed on a glass chamber, and microtubules bound to trapped beads were brought into contact with dynein. Displacements and binding times were measured under different ATP concentrations. FRET efficiencies were measured to investigate linker swing.
5:Data Analysis Methods:
Displacements were analyzed using Gaussian distributions and cumulative distributions. Binding times were fit to exponential curves. ATP-dependent efficiencies and displacements were fit to sigmoidal and Michaelis-Menten equations, respectively.
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spectrofluorometer
FP-6600
Jasco
Measuring FRET efficiencies between BFP and GFP in dynein constructs.
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optical tweezers
Measuring the displacements of single-headed cytoplasmic dynein interacting with microtubules.
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electron microscope
Tecnai F20
Observing the samples under high resolution.
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polarity-marked microtubules
Used in the single-molecule assay to observe dynein interactions.
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NeutrAvidin
Thermo
Binding to polyethylene fluorescent beads for protein coating.
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BFP
pRSET/BFP
Invitrogen
Fused to the AAA2 domain of dynein for FRET measurements.
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GFP
AcGFP
Clontech
Fused to the N-terminus of the linker in dynein for FRET measurements.
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ATP
Used to investigate the ATP-dependent displacement and binding times of dynein.
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ADP-Vi
Used to mimic the pre-stroke state of dynein in biochemical assays.
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