研究目的
The simple but sensitive detection of low levels of miRNAs in biological samples.
研究成果
The proposed 3CL-NPC assay is a facile enzyme-free method for the sensitive detection of miRNAs by taking advantage of target-templated cycling click nucleic acid ligation and TIRFM imaging of MNPs. It achieves a quite low detection limit (50 fM) of target miRNA and is capable of clearly discriminating even one-base variation among miRNA sequences with high specificity.
研究不足
The technical and application constraints of the experiments, as well as potential areas for optimization, are not explicitly mentioned in the paper.
1:Experimental Design and Method Selection:
The strategy is based on the counting of cycling click chemical ligation (3CL)-illuminated fluorescent magnetic nanoparticles (MNPs) with a total internal reflection fluorescence microscopy (TIRFM). Each miRNA molecule triggers many cycles of click chemical ligation reactions to produce plentiful ligated oligonucleotides (ODNs) with both 5’-biotin and 3’-fluorophore, resulting in efficient signal amplification.
2:Sample Selection and Data Sources:
Synthetic let-7a miRNA is employed as a model target.
3:List of Experimental Equipment and Materials:
Streptavidin-functionalized magnetic nanoparticles (STV-MNPs, 50 nm), Poly vinyl alcohol (PVA, MW ~61000), Glass coverslips (~
4:17 mm), HPLC-purified oligonucleotides. Experimental Procedures and Operational Workflow:
The 3CL reaction is performed in a mixture consisting of P1, P2, PBST reaction buffer, and different amounts of target miRNA or total RNA sample. The mixture is incubated under specific reaction conditions. MNPs are introduced and incubated with the 3CL reaction mixture. The MNPs are magnetically separated and dispersed in PBS containing PVA. The MNPs suspension is placed on a thin glass slip and subjected to TIRFM imaging.
5:Data Analysis Methods:
The obtained TIRFM images of the MNPs are processed by Image J and the integrated fluorescence intensity (IntDen) in each image is employed for the quantitative detection of the miRNA target.
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