研究目的
To construct a large Stokes shift fluorescent protein by fusing mCherry and BDFP1.6 for improved brightness and applications in multicolor bioimaging.
研究成果
BDFP2.0, created by fusing mCherry and BDFP1.6, exhibits a large Stokes shift (~79 nm), high effective brightness (4.2-fold brighter than iRFP670), and excellent stability under various conditions. It is suitable for multicolor bioimaging and labeling intracellular components, with potential applications in biomedical research despite its dimeric state.
研究不足
BDFP2.0 exists primarily as a dimer, which may limit its use in applications requiring monomeric proteins. The BV-loading yield in vivo might not be optimal, potentially reducing effective brightness. The fusion protein's size (45 kDa) could affect labeling density in some contexts.
1:Experimental Design and Method Selection:
The study involved fusing mCherry with BDFP
2:6 using different linkers to optimize F?rster resonance energy transfer (FRET) efficiency. Computational modeling of linkers was performed using PEP-FOLD. Sample Selection and Data Sources:
Proteins were expressed in E. coli BL21 (DE3) and mammalian cells (HEK 293T and HeLa cells). DNA synthesis and cloning were done using standard protocols.
3:List of Experimental Equipment and Materials:
Equipment included spectrophotometers (UV-9000S), spectrofluorimeters (F320), sonicator (JY92-II), centrifuges, chromatography columns (Superdex 75), microscopes (Nikon Ti, Olympus fv-1000 mp), and software (ImageJ, FV10-ASW). Materials included plasmids (pET28, pACYC-ho1), buffers (KPB), antibiotics, and cell culture media.
4:Experimental Procedures and Operational Workflow:
Cloning and expression in E. coli, protein purification via Ni2+-affinity chromatography, spectral analysis, oligomerization assays (gel chromatography and CytERM assay), expression in mammalian cells using transfection with Lipofectamine 2000, and fluorescence imaging.
5:Data Analysis Methods:
Fluorescence spectra were analyzed to calculate FRET efficiency. Effective brightness was normalized to eGFP expression. Statistical analysis included standard deviation calculations.
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confocal laser scanning microscope
fv-1000 mp
Olympus
Used for high-resolution fluorescence imaging of cells.
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spectrophotometer
UV-9000S
Shanghai Metash Instruments Co., Ltd
Used for UV-Vis absorption spectroscopy to analyze chromoproteins.
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spectrofluorimeter
F320
TianJin GangDong Sci and Tech Development Company
Used for recording fluorescence spectra of proteins.
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sonicator
JY92-II
Scientz Biotechnology
Used for disrupting cells during protein purification.
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microscope
Nikon Ti
Nikon
Used for fluorescence imaging of cells with specific filters.
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one step cloning kit
ClonExpress II
Vazyme
Used for molecular cloning and DNA recombination.
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Lipofectamine
2000
Invitrogen
Used for transfection of mammalian cells with DNA.
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chelating Sepharose
Amersham Biosciences
Used for Ni2+-affinity chromatography to purify proteins.
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Superdex 75 column
Used for size-exclusion chromatography to assess oligomerization.
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glass-bottomed cell culture dishes
Nest
Used for culturing cells for microscopy.
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