研究目的
To evaluate the potential of multicharged phthalocyanines as selective ligands for G-Quadruplex DNA structures over duplex DNA, aiming for telomerase inhibition in cancer therapy.
研究成果
ZnPc1 and ZnPc4 exhibit high selectivity and affinity for G-Quadruplex DNA over duplex DNA, with potential for telomerase inhibition in cancer therapy. The balance of charge number and position is crucial for selectivity. Both compounds accumulate in cancer cell nuclei and show cytotoxicity, indicating promise as therapeutic agents.
研究不足
The study is limited to in vitro experiments; in vivo efficacy and detailed binding mechanisms are not explored. Selectivity and affinity were assessed primarily with specific DNA sequences, and further optimization may be needed for broader applications.
1:Experimental Design and Method Selection:
The study used UV-Vis spectroscopy, fluorescence spectroscopy (G4-FID assay), and circular dichroism (CD) to investigate interactions between phthalocyanines and various DNA structures (G-Quadruplexes and duplex DNA). Titrations were performed to assess affinity and selectivity.
2:Sample Selection and Data Sources:
DNA oligonucleotides included human telomeric repeat (AG3(T2AG3)3), bimolecular Oxytricha repeat (G4T4G4)2, tetramolecular sequence (T2G5T)4, and duplex DNA (5GC and salmon sperm DNA). Phthalocyanines (ZnPc1, ZnPc2, ZnPc3, ZnPc4) and TMPyP were synthesized or purchased.
3:List of Experimental Equipment and Materials:
Equipment included UV-2501-PC spectrophotometer (Shimadzu), Fluoromax-3 spectrofluorometer (Horiba), J-1500 and J-815 CD spectrophotometers (Jasco), confocal microscope LSM 710 (Carl Zeiss). Materials included PBS buffer, DMSO, oligonucleotides from Thermo Fisher Scientific, TMPyP from Sigma Aldrich.
4:Experimental Procedures and Operational Workflow:
Titrations involved adding DNA to phthalocyanine solutions, monitoring spectral changes. Fluorescence assays used thiazole orange displacement. CD melting experiments determined stabilization effects. Cell studies included MTT assays and fluorescence microscopy on UM-UC-3 bladder cancer cells.
5:Data Analysis Methods:
Data analyzed using Hypspec program for KD values, Hill saturation binding model for fluorescence titrations, sigmoidal curve fitting for CD melting, and non-linear regression for MTT assays.
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UV-2501-PC spectrophotometer
UV-2501-PC
Shimadzu
Recording UV-Vis absorption spectra in the range 350-800 nm for studying ligand-DNA interactions.
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J-1500 CD spectrophotometer
J-1500
Jasco
Acquiring circular dichroism spectra for DNA structure analysis and melting experiments.
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J-815 CD spectrophotometer
J-815
Jasco
Acquiring circular dichroism spectra with temperature control for stability studies.
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confocal microscope
LSM 710
Carl Zeiss
Imaging fluorescence in cells to assess nuclear uptake of ligands.
ZEISS LSM 990 Spectral Multiplex
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oligonucleotides
Various sequences (e.g., AG3(T2AG3)3, G4T4G4)2)
Thermo Fisher Scientific
DNA samples for forming G-Quadruplex and duplex structures in experiments.
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Fluoromax-3 spectrofluorometer
Fluoromax-3
Horiba
Measuring fluorescence emissions for G4-FID assays and intrinsic fluorescence titrations.
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TMPyP
5,10,15,20-Tetrakis(1-methylpyridinium-4-yl)porphyrin tosylate
Sigma Aldrich
Used as a standard ligand for comparison in DNA binding studies.
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