研究目的
To develop a trimolecular fluorescence complementation (TriFC) system for in vivo visualization of RNA-protein interaction in plants, as methods to image RNA-protein interactions in living plants had not been developed until then.
研究成果
The TriFC assay successfully enables in vivo visualization of RNA-protein interactions in plants, providing a novel tool for studying lncRNA functions. It combines BiFC and MS2 systems to detect interactions via YFP complementation, validated with ELENA1 and MED19a. This method offers insights into subcellular localization and dynamics of RNA-protein complexes, with potential for broader applications in plant biology.
研究不足
Posttranscriptional gene silencing (PTGS) can reduce efficiency, mitigated by co-infiltration with pUBQ:p19. Optimal combination of 6xMS2 tag and YFP fragment orientations may require testing if signals are not detected. The method is transient and may not reflect stable interactions.
1:Experimental Design and Method Selection:
The TriFC system combines the bimolecular fluorescence complementation (BiFC) system with the MS2 system for RNA imaging. Target RNA is tagged with 6xMS2 repeats, and MCP and RNA-binding protein are fused with YFP fragments. Upon RNA-protein interaction, YFP fragments complement to emit fluorescence, visualized by confocal microscopy.
2:Sample Selection and Data Sources:
Uses Nicotiana benthamiana plants (2–4 weeks old, 6–10 leaves stage). Specific constructs include pENTR-ELENA1 (lncRNA), pENTR-Med19a (RNA-binding protein), and pENTR-MCP.
3:List of Experimental Equipment and Materials:
Includes destination vectors (pBA3130, pBA3132, pBA3134, pBA3136, pBA-6xMS2-DC, pBA-DC-6xMS2), entry clones, LR Clonase II, E. coli DH5α, Agrobacterium GV3101, antibiotics (spectinomycin, kanamycin), LB media, acetosyringone, confocal laser scanning microscope (ZEISS LSM 780), and ZEN image analyzer.
4:Experimental Procedures and Operational Workflow:
Vector construction via LR reaction and transformation into E. coli and Agrobacterium. Agrobacterium cultures are prepared, mixed, and infiltrated into tobacco leaves using a syringe. Plants are incubated for 2–3 days, and YFP signals are observed with confocal microscopy at 514 nm excitation and 520–550 nm emission detection.
5:Data Analysis Methods:
YFP fluorescence signals are analyzed using ZEN image analyzer to confirm RNA-protein interactions.
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Confocal laser scanning microscope
LSM 780
ZEISS
Microscope for observing YFP fluorescence signals to visualize RNA-protein interactions in vivo
ZEISS LSM 990 Spectral Multiplex
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LR Clonase II
Thermo Fisher Scientific
Enzyme mix for LR recombination in Gateway cloning to construct TriFC vectors
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E. coli competent cells
DH5α
Transformation host for cloning TriFC vectors after LR reaction
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Agrobacterium competent cells
GV3101
Transformation host for delivering DNA constructs into tobacco leaves via infiltration
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Spectinomycin
Sigma
Antibiotic for selection of transformed bacteria with spectinomycin-resistant vectors
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Kanamycin
Sigma
Antibiotic for selection of transformed bacteria with kanamycin-resistant vectors
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QIAprep Spin Miniprep Kit
Qiagen
Kit for plasmid extraction from E. coli after transformation
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Acetosyringone
Sigma
Compound added to Agrobacterium resuspension solution to enhance transformation efficiency during infiltration
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Syringe
1 mL
BD
Tool for infiltrating Agrobacterium suspensions into tobacco leaves
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ZEN image analyzer
ZEISS
Software for analyzing confocal microscopy images to detect and quantify YFP signals
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