研究目的
To improve the existing FLIM/FRET methodology for monitoring the interaction between Nrf2 and Keap1 in single live cells to increase throughput, precision, and reduce cell-to-cell variability.
研究成果
The improved FLIM/FRET methodology successfully increased throughput and precision for measuring Nrf2-Keap1 interactions in live cells. Key enhancements included global binning, use of measured IRF, flexible linkers to avoid orientation bias, and sfGFP for better representation of short-lived Nrf2. Acceptor level was identified as a major source of variability, and accounting for it improved sensitivity and reproducibility. The method is robust for detecting subtle changes in interaction strength.
研究不足
The methodology may be affected by cell-to-cell variability due to acceptor expression levels, and the use of overexpression systems might not fully represent endogenous conditions. Phototoxicity and cell movement during live imaging impose constraints on acquisition time and laser power.
1:Experimental Design and Method Selection:
The study used an improved FLIM/FRET methodology to measure Nrf2-Keap1 interactions. DNA constructs were generated with flexible linkers between Keap1 and mCherry, and sfGFP was used as the FRET donor to match Nrf2's short half-life. A global binning approach was applied for data analysis, and the Instrument Response Function (IRF) was measured for precision.
2:Sample Selection and Data Sources:
HeLa and HEK293 cells were cultured and transfected with various DNA constructs (e.g., EGFP-Nrf2, sfGFP-Nrf2, Keap1-mCherry mutants). Cells were imaged live using confocal microscopy and FLIM.
3:List of Experimental Equipment and Materials:
Confocal Zeiss LSM 710 microscope, SPC-150 Time-Correlated Single Photon Counter (TCSPC) module, Coherent Chameleon two-photon laser, HPM-100-40GaAsP detector, FluoroDish cell culture dishes, lipofectamine 2000, calcium phosphate transfection method, immunoblotting equipment (e.g., BioRad ChemiDoc MP Imaging system, Odyssey CLx Imaging System), various antibodies (anti-Nrf2, anti-EGFP, anti-Keap1, anti-β-actin).
4:Experimental Procedures and Operational Workflow:
Cells were transfected, imaged for fluorescence, and subjected to FLIM measurements. Fluorescence lifetimes were analyzed using SPCImage software with global binning and measured IRF. Data were processed in OMERO and Excel/R for statistical analysis.
5:Data Analysis Methods:
Fluorescence lifetime data were fitted with exponential decay models (1- or 2-component) in SPCImage. FRET efficiency was calculated as EFRET = 1 – tm/t2. Statistical analysis included Pearson's correlation, linear regression, Wilcoxon rank sum test, and Welch t-test in R or Excel.
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Confocal Microscope
LSM 710
Zeiss
Live cell imaging and fluorescence detection
ZEISS LSM 990 Spectral Multiplex
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Time-Correlated Single Photon Counter
SPC-150
Becker&Hickl
FLIM measurements
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Two-Photon Laser
Chameleon
Coherent
Pulsed illumination for FLIM
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Detector
HPM-100-40GaAsP
Becker&Hickl
Detection of emitted light in FLIM
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Imaging System
Odyssey CLx
LiCOR
Scanning of IRDye-labeled blots
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Software
ZEN
Zeiss
Operation of microscope and image capture
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Software
SPCImage
Becker&Hickl
Analysis of FLIM data
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Cell Culture Dish
FluoroDish
World Precision Instruments
Glass-bottom dish for live cell imaging
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Transfection Reagent
lipofectamine 2000
Invitrogen
DNA transfection into cells
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Antibody
anti-Nrf2
Cell Signaling Technologies
Immunoblotting detection of Nrf2
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Antibody
anti-EGFP
Abcam
Immunoblotting detection of EGFP/sfGFP
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Antibody
anti-β-actin
Sigma
Loading control in immunoblotting
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Imaging System
ChemiDoc MP
BioRad
Scanning and imaging of blots
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Software
OMERO
Image storage and processing
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