研究目的
To determine the stoichiometric ratios of intracellular hetero-oligomeric complexes in single living cells using Gaussian FRET two-hybrid assays.
研究成果
The Gaussian FRET two-hybrid analysis method is applicable to measuring the stoichiometric ratios of multiple hetero-oligomeric complexes in single living cells. It was successfully used to determine that Bcl-XL associates with Bad to form a hetero-oligomeric complex with a stoichiometric ratio of 2:1 on mitochondria.
研究不足
The method is only applicable to determining the stoichiometric ratio of complexes in living cells with small amounts of free donor and acceptor, as free molecules can affect FRET efficiency measurements.
1:Experimental Design and Method Selection:
The study integrates multiple Gaussian-functions analysis into FRET two-hybrid assays to determine stoichiometric ratios of hetero-oligomeric complexes. It uses E-FRET and 33-FRET methods for measuring donor- and acceptor-centric FRET efficiencies (ED and EA). Gaussian functions are fitted to E-count histograms of ED and EA images to obtain peak values and stoichiometric ratios.
2:Sample Selection and Data Sources:
Human cervical cancer (Hela) cells were used, transfected with various FRET tandem plasmids (e.g., CVC, VCV, C32V, CFP-Bcl-XL, Bad-YFP). Cells were cultured in DMEM with 10% fetal calf serum and transfected using Turbofect? reagent.
3:List of Experimental Equipment and Materials:
Zeiss LSM 880 inverted laser scanning confocal microscope system with a X63/1.4 oil-immersion objective and two PMT detectors; ZEN 2.0 software; plasmids from Addgene and provided by other labs; DMEM medium; fetal calf serum; penicillin/streptomycin; Turbofect? transfection reagent.
4:4 oil-immersion objective and two PMT detectors; ZEN 0 software; plasmids from Addgene and provided by other labs; DMEM medium; fetal calf serum; penicillin/streptomycin; Turbofect? transfection reagent. Experimental Procedures and Operational Workflow:
4. Experimental Procedures and Operational Workflow: Cells were transfected with plasmids, imaged using confocal microscopy in donor, FRET, and acceptor channels. ED and EA were calculated using E-FRET and 33-FRET methods. Gaussian functions were fitted to E-count histograms to determine peak values and stoichiometric ratios.
5:Data Analysis Methods:
Gaussian peak fitting to E-count histograms; statistical analysis of ED, EA, and R values from multiple cells; use of IAA/IDD ratio to indicate co-expression levels.
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LSM 880 inverted laser scanning confocal microscope system
Axio Observer
Carl Zeiss
Used for imaging cells in donor, FRET, and acceptor channels to measure fluorescence intensities for FRET efficiency calculations.
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ZEN software
2.0
Carl Zeiss
Software used for controlling the confocal microscope and processing imaging data.
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Turbofect transfection reagent
Fermentas Inc.
Used for transfecting plasmids into Hela cells.
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DMEM
Gibco
Cell culture medium for growing Hela cells.
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Fetal calf serum
Sijiqing
Supplement in cell culture medium to support cell growth.
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